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Craving a fall-inspired pizza? Look no further than this Squash Pizza recipe! Flavorful roasted butternut squash sauce, creamy cheese, and salty prosciutto combine in perfect harmony for a unique and deliciously satisfying pizza experience.

Butternut Squash Flatbread Pizza with Goat Cheese, Prosciutto & Pumpkin Seeds cut into long horizontal slices on a crinkled piece of parchment paper

Update: This recipe was originally published in January 2017. I made edits to the post below to include more information about making pizza with roasted butternut squash crust at home.

Hi, friends! I hope you ready to ditch the ordinary and give your pizza nights at home a major upgrade because today’s recipe is one of my all time favorites. Confession – I’ve been making this squash pizza every single fall weekend since 2017. And, honestly, I show no signs of slowing down, it’s just that good.

Overhead shot of roasted butternut squash puree in a the bowl of a large food processor sitting on a grayish white counter

About this butternut pizza recipe

This recipe for butternut squash pizza is all about the crust and toppings – it’s layers of heavenly flavors, you guys.

Featuring sweet, savory, smooth and luscious butternut squash puree topped with thinly sliced red onions, creamy, decadent goat cheese, earthy thyme, salty prosciutto, crunchy pumpkin seeds (pepitas), and nutty parmesan all layered on a chewy, warm naan flatbread. But, feel free to use regular pizza dough if you prefer!

All the ingredients to make Butternut Squash Flatbread pizza neatly laid out on a bluish-gray surface

Ingredients for butternut pizza

Butternut squash sauce

  • Butternut Squash
  • Garlic
  • Olive Oil
  • Fresh Thyme
  • Chili Powder
  • Honey

Pizza toppings

  • Butternut Squash Sauce: See above.
  • Red Onion
  • Goat Cheese
  • Parmesan Cheese
  • Prosciutto
  • Pumpkin Seeds
  • Salt and Pepper: To enhance all the flavors
Overhead, up-close shot of the prosciutto roses on a Butternut Squash Flatbread Pizza with Goat Cheese & Pumpkin Seeds

How to make butternut squash pizza

Now that we have discussed how downright delicious this pizza is, let’s talk about how it all goes down. The most time consuming part of this flatbread is the butternut squash puree. But, it only takes 20-30 minutes and whipping it together is SUPER EASY. Here’s how:

How to make butternut squash sauce for pizza

  1. Roast Squash: Throw some diced squash onto a baking sheet with a few cloves of garlic, a sprinkle of chili powder, and thyme, and a drizzle of oil. Then, roast in the oven until tender.
  2. Puree: Next, transfer the squash and garlic to a food processor with a bit of honey and puree. Done and done.

How to make pizza with butternut squash sauce

  • Sauce Pizza Crust: Generously spread the roasted butternut squash puree sauce on a piece of naan bread, a flatbread, or prepared pizza dough.
  • Add Toppings: Scatter with red onions, crumbled goat cheese, and grated parmesan all over the squash. Transfer to a warm oven and bake until golden.
  • Garnish: Remove the pizza from the oven and garnish with prosciutto, fresh thyme, and pumpkin seeds.
  • Serve: Slice and chow down.
Overhead shot of Butternut Squash Flatbread Pizza with Goat Cheese, Prosciutto & Pumpkin Seeds cut into long horizontal slices on a crinkled piece of parchment paper with a wood handled steak knife, fresh thyme, ramekin of salt and ramekin of red pepper flakes surrounding the pizza

Tips for the best squash pizza

  1. I have used plain naan, garlic naan and flatbreads to make this pizza and all of them are delicious. You can make your own pizza dough and use that as well if you would like, just be sure to par-bake the pizza dough before adding the toppings. Instead of using 2 pieces of naan or flatbread, you can make one large pizza if desired.
  2. If you want to make prosciutto roses like you see here, simply take a small slice of prosciutto and wrap it around your finger. Voila. Prosciutto Roses.
  3. If you want your prosciutto to be crispy, simply add the prosciutto to the pizza with the red onion and goat cheese and bake as directed.
  4. The butternut squash puree can be made up to 4 days in advance and stored, covered, in the refrigerator.

Overhead, up-close shot of a few long vertical slices of Butternut Squash Flatbread Pizza with Goat Cheese, Prosciutto & Pumpkin Seeds on a crinkled piece of parchment paper

FAQs: frequently asked questions

Below you’ll find the most common questions and answers about butternut squash on pizza. If you have a question you’d like answered, please drop it in the comments section below!

Do I have to pre-cook the butternut squash?

Yes, roasting the butternut squash is essential to this recipe. Cooking it beforehand ensures the squash becomes tender enough to puree into a sauce. Also, roasting the squash caramelizes it, which adds depth of flavor and a pleasant texture to your butternut squash pizza sauce.

What’s the best way to roast butternut squash?

The best way to roast squash is in the oven. There are two common methods to preparing the squash for roast, but I’m partial to the first one:

  • Cubed: Cut the squash into bite-size cubes, toss them with olive oil, salt, and pepper, then roast them on a baking sheet at 400°F (200°C) for 20-30 minutes, or until fork tender.
  • Wedges: Cut the squash into wedges, drizzle with olive oil, season with salt and pepper, and roast directly on a baking sheet at 400°F (200°C) for 30-40 minutes, or until tender and slightly caramelized.

What kind of cheese should I use for butternut squash pizza?

Many varieties of cheese pair well with butternut squash, depending on your preferred flavor profile:

  • Goat cheese: This recipe calls for goats cheese which lends a tangy and slightly salty element that complements the sweetness of the squash.
  • Mozzarella: A classic pizza choice that offers a mild and creamy flavor.
  • Fontina: This creamy cheese has a nutty flavor that pairs well with the sweetness of the squash.
  • Ricotta: Lends a creamy and slightly sweet flavor that adds a unique touch.
  • Combination of cheeses: Feel free to experiment! Combining mozzarella with goat cheese, ricotta, or fontina creates a delicious flavor profile.

What other toppings can I add to my butternut squash pizza?

The beauty of pizza pies lie in their versatility! Here are some delicious options to complement this pizza with butternut squash:

  • Caramelized onions: Adds a touch of sweetness and savory depth.
  • Crispy bacon or sausage: Offers a salty and savory contrast to the sweetness of the squash. Bonus points if you candy your bacon first.
  • Sage leaves: Crisp sage leaves on the stove in butter and add them to your pizza for delightful crunch and earthy flavor.
  • Arugula: Leafy arugula lends a peppery kick. Just be sure to add the arugula after baking for freshness.
  • Walnuts or pecans: Salty, toasted nuts lend a welcome crunchy textural contrast.

Can I use pre-made pizza dough for this recipe?

Absolutely! Pre-made pizza dough is a convenient option that can save a ton of time. Look for store-bought dough in the refrigerated section of the grocery store or use your favorite pizza dough recipe if you prefer making your own.

Serving yellow squash pizza

Beverage pairings

  • Beer: Pizza and a good-quality beer are a classic combination for a good reason. This squash pizza pairs great with everything from a crisp Pilsner to a bolder IPA.
  • Wine: While less common, wine and pizza are delightful together, too. Light-bodied red wines like a Pinot Noir and crisp, dry white wines, like Pinot Grigio or Sauvignon Black pair well.

Side dishes

Pizza pairs great with a wide variety of sides; however, the best pairing will be the one you enjoy most! I recommend experimenting so you can discover your favorite pizza combinations. Below are some ideas to inspire:

  • Appetizers: Hand-held Italian appetizers, like Baked Zucchini Sticks or fried mozzarella sticks add a little crunch to your meal.
  • Salad: If you’re looking to balance the richness of your pizza, consider a simple side salad, marinated tomato salad, or a heartier Italian Chopped Salad.
  • Soup: Light, yet hearty soups, such as tomato and basil soup, tuscan white bean soup, or white bean tomato soup can be a satisfying side, especially during cooler months.
  • Veggies: If you’re looking for a quick and healthy side dish, simply toss your favorite season vegetable with a little olive oil, salt, and pepper, and roast in the oven. Broccoli, cauliflower, and mushrooms work great here.

Storing leftovers

Allow leftover squash pizza to cool completely to room temperature before placing in an airtight container. Store in the refrigerator for up to 3 days.

For the best results, I recommend storing the butternut squash pizza sauce separately from the pizza crust. Store butternut sauce in an airtight container in the fridge for up to 5 days. .

Angled, up-close shot of a prosciutto rose on a Butternut Squash Flatbread pizza with the rest of the pizza blurred to focus just on the rose

Pizza night deserves a delicious upgrade. Add this easy Butternut Squash Flatbread Pizza to the rotation!

Until next week friends, cheers – to easy, yet elegant pizzas!

Cheyanne

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More pizza recipes!

How to make Butternut Squash Flatbread Pizza recipe and video👇

Butternut Squash Pizza

5 from 12 votes
Total Time: 50 minutes
Prep Time: 15 minutes
Cook Time: 35 minutes
Servings: 4
Give pizza night a fresh and delicious upgrade with this easy Butternut Squash Flatbread Pizza! Topped with decadent goat cheese, pungent red onions, salty prosciutto, crunchy pumpkin seeds and fresh thyme, these pizzas are guaranteed to please!

Ingredients 

  • Butternut Squash Sauce (yield about 1 ½ cups):
  • 4 Cups Butternut Squash – cubed (about ½ a medium squash)
  • 3 Cloves Garlic – peeled
  • 3 TBS Olive Oil , divided
  • 1 TBS Fresh Thyme , plus more for topping pizza
  • ½ tsp Chili Powder
  • 1 TBS Honey , or more to taste
  • Pizza:
  • 2 Pieces Garlic Naan
  • ½ Red Onion – thinly sliced
  • 6 ounces Goat Cheese – cut into ¼’’ thick slices
  • ½ Cup Parmesan – freshly grated
  • 3 ounces Prosciutto
  • Roasted Pumpkin Seeds (optional for topping)
  • Kosher Salt and Ground Pepper , to taste

Instructions

  • Preheat oven to 400 degrees F. Line a baking sheet with aluminum foil for easy clean up. Add the squash and garlic to the baking sheet. Drizzle with 2 tablespoons of olive oil and sprinkle with thyme and chili powder. Season generously with salt and pepper. Toss to combine.
  • Roast squash in the oven until fork tender, about 20-30 minutes, tossing halfway through cooking.
  • Make the squash sauce: Transfer squash and garlic to a food processor. Add in the remaining tablespoon of oil and honey. Puree until creamy and smooth, adding more olive oil (or vegetable broth or water) if it’s too thick. (You want it creamy, smooth and spreadable, but not too thin). Taste and adjust for seasoning with salt and pepper and sweetness with honey.
  • For the Pizza: Place naan on a baking sheet. Spread with a heaping 1/3 – ½ cup of the squash sauce. Top with red onion, goat cheese slices and parmesan. Bake for 13-15 minutes, or until golden brown.
  • To serve: Remove from oven and top with prosciutto, fresh thyme and pumpkin seeds. Serve immediately. Enjoy!

Video

Notes

*Yield: 2 Flatbread Pizzas or 1 Large Pizza
1. I have used plain naan, garlic naan and flatbreads to make this pizza and all of them are delicious. You can make your own pizza dough and use that as well if you would like, just be sure to par-bake the pizza dough before adding the toppings. Instead of using 2 pieces of naan or flatbread, you can make one large pizza if desired.
2. If you want to make prosciutto roses like you see here, simply take a small slice of prosciutto and wrap it around your finger. Voila. Prosciutto Roses.
3. If you want your prosciutto to be crispy, simply add the prosciutto to the pizza with the red onion and goat cheese and bake as directed.
4. The butternut squash puree can be made up to 4 days in advance and stored, covered, in the refrigerator.

Nutrition

Calories: 620kcal    Carbohydrates: 53g    Protein: 21g    Fat: 36g    Saturated Fat: 13g    Cholesterol: 47mg    Sodium: 932mg    Potassium: 597mg    Fiber: 4g    Sugar: 10g    Vitamin A: 15575IU    Vitamin C: 33.9mg    Calcium: 328mg    Iron: 2.3mg

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Angled shot of Butternut Squash Flatbread Pizza with Goat Cheese, Prosciutto & Pumpkin Seeds cut into long horizontal slices on a crinkled piece of parchment paper with a wood handled knife and small ramekin of salt blurred in the background